DeCGR

DeCGR, an interactive tool for deciphering complex genomic rearrangements from chromatin contact maps.

Introduction

DeCGR is organized into modules, with each module dedicated to a specific task, including:

• Breakpoint Filtering

• Fragment Assembly

• Validation CGRs

• Reconstruct Hi-C Map

Contents

• Installation
  • Required Packages
  • Installation
  • Running
  • Test Data
• Breakpoint Filtering
  • Description
  • Inputs
  • Guideline
  • Output
• Fragment Assembly
  • Inputs
  • Guideline
  • Output
• Validation CGRs
  • Inputs
  • Guideline
  • Output
• Reconstruct Hi-C Map
  • Inputs
  • Guideline
  • Output

Getting Help

For all kinds of questions, suggestions for changes/enhancements, and to report bugs, please create an issue on our GitHub repository.